masterXICs_DIAlignR: Master fragment-ion chromatograms from two parents

In shubham1637/DIAlignR: Dynamic Programming Based Alignment of MS2 Chromatograms

Master fragment-ion chromatograms from two parents

Description

Created merged XICs of peptide (ID = 4618) 14299_QFNNTDIVLLEDFQK/3 from two SWATH runs:
run1 : hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
run2 : hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML

Usage

masterXICs_DIAlignR

Format

The format is similar to the output of childXICs. A list of two elements: First element contains six fragmentation chromatograms. The second element has aligned parent time-vectors and corresponding child time-vector. It has five columns:

indexAligned.ref

(integer) aligned indices of reference run.

indexAligned.eXp

(integer) aligned indices of experiment run.

tAligned.ref

(numeric) aligned time-vector of reference run.

tAligned.eXp

(numeric) aligned time-vector of experiment run.

alignedChildTime

(numeric) aligned time-vector of master run.

Source

File test_GenerateData.R has source code to generate the example data.

shubham1637/DIAlignR documentation built on March 29, 2023, 8:45 p.m.