alignToRoot4: Step 4 for progressive alignment

In shubham1637/DIAlignR: Dynamic Programming Based Alignment of MS2 Chromatograms

Step 4 for progressive alignment

Description

This is needed when leaves of the tree are directly aligned to the root

Usage

alignToRoot4(
  dataPath,
  params,
  outFile = "DIAlignR",
  oswMerged = TRUE,
  applyFun = lapply
)

Arguments

dataPath	(string) path to xics and osw directory.
params	(list) parameters are entered as list. Output of the paramsDIAlignR function.
outFile	(string) name of the output file.
oswMerged	(logical) TRUE if merged file from pyprophet is used.
applyFun	(function) value must be either lapply or BiocParallel::bplapply.

Author(s)

Shubham Gupta, [e-mail]

ORCID: 0000-0003-3500-8152

License: (c) Author (2021) + GPL-3 Date: 2021-09-25

See Also

progAlignRuns

shubham1637/DIAlignR documentation built on March 29, 2023, 8:45 p.m.