AffineAlignObj-class: An S4 object for class AffineAlignObj
In shubham1637/DIAlign: Dynamic Programming Based Alignment of MS2 Chromatograms
AffineAlignObj-class R Documentation
An S4 object for class AffineAlignObj
Description
s is a point-wise similarity matrix between signalA and signalB.
Intermediate matrices M,A,B are calculated from s for affine-alignment. Each cell of the Traceback
matrix has coordinate of its parent cell. path matrix is a binary matrix with ones indicating path
of maximum cumulative score.
GapOpen and GapExten are gap-opening and gap-extension penalties used by affine alignment algorithm.
indexA_aligned and indexB_aligned are aligned indices of signalA and SignalB. The cumulative
alignment score is in score vector.
Author(s)
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3
Date: 2019-12-14
See Also
doAffineAlignmentCpp
shubham1637/DIAlign documentation built on March 27, 2023, 7:12 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| AffineAlignObj-class | R Documentation |
An S4 object for class AffineAlignObj
Description
s is a point-wise similarity matrix between signalA and signalB. Intermediate matrices M,A,B are calculated from s for affine-alignment. Each cell of the Traceback matrix has coordinate of its parent cell. path matrix is a binary matrix with ones indicating path of maximum cumulative score. GapOpen and GapExten are gap-opening and gap-extension penalties used by affine alignment algorithm. indexA_aligned and indexB_aligned are aligned indices of signalA and SignalB. The cumulative alignment score is in score vector.
Author(s)
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3 Date: 2019-12-14
See Also
doAffineAlignmentCpp
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.