stabilize: Stabilize variance of counts
In sales-lab/spatialDE: R wrapper for SpatialDE
stabilize R Documentation
Stabilize variance of counts
Description
Stabilize variance of negative binomial data using Anscombe's approximation.
This function is a wrapper for stabilize from the
NaiveDE Python package.
Usage
stabilize(counts)
Arguments
counts
matrix with expression values for samples in
columns and genes in rows.
Value
matrix of variance stabilized counts.
Examples
## Mock up a SpatialExperiment object wit 400 cells and 3 genes
set.seed(42)
mock <- mockSVG(20, 3, 1)
stabilized <- stabilize(mock$counts)
sales-lab/spatialDE documentation built on Feb. 12, 2024, 2:47 p.m.
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| stabilize | R Documentation |
Stabilize variance of counts
Description
Stabilize variance of negative binomial data using Anscombe's approximation.
This function is a wrapper for stabilize from the
NaiveDE Python package.
Usage
stabilize(counts)
Arguments
counts |
|
Value
matrix of variance stabilized counts.
Examples
## Mock up a SpatialExperiment object wit 400 cells and 3 genes
set.seed(42)
mock <- mockSVG(20, 3, 1)
stabilized <- stabilize(mock$counts)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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