plotAlignmentIdentity: plot a histogram of mapping identities
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
View source: R/AlignmentPlots.R
Description
This method will plot a histogram of mapping identities
Usage
1
2
plotAlignmentIdentity(bamFile, flag = 'Primary', lower = 0.7,
upper = 1, segments = 50)
Arguments
bamFile
is the path to the bamFile to plot
flag
is the flagged sequence type to plot [Primary]
lower
lower limit for plotting values
upper
upper limit for plotting values
segments
number of segments to split data into
Value
a ggplot2 object
Examples
1
2
3
4
5
demoBam <- system.file("extdata",
"cas9_FAK76554.bam",
package = "nanopoRe")
bamSummary <- bamSummarise(demoBam, blockSize=1000L)
plotAlignmentIdentity()
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value Examples
View source: R/AlignmentPlots.R
Description
This method will plot a histogram of mapping identities
Usage
1 2 | plotAlignmentIdentity(bamFile, flag = 'Primary', lower = 0.7,
upper = 1, segments = 50)
|
Arguments
bamFile |
is the path to the bamFile to plot |
flag |
is the flagged sequence type to plot [Primary] |
lower |
lower limit for plotting values |
upper |
upper limit for plotting values |
segments |
number of segments to split data into |
Value
a ggplot2 object
Examples
1 2 3 4 5 | demoBam <- system.file("extdata",
"cas9_FAK76554.bam",
package = "nanopoRe")
bamSummary <- bamSummarise(demoBam, blockSize=1000L)
plotAlignmentIdentity()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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