ncalc: calculate Nstatistics (e.g. N50) for given sequence...
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
View source: R/SequenceCharacteristics.R
Description
Given a set of contigs, the N50 is defined as the sequence length of the
shortest contig at 50
(https://en.wikipedia.org/wiki/N50,_L50,_and_related_statistics)
Usage
1
ncalc(len.vector, n)
Arguments
len.vector
is a vector of sequence lengths
n
is a numeric of the value to use
Value
numeric of the corresponding N value
Examples
1
2
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value Examples
View source: R/SequenceCharacteristics.R
Description
Given a set of contigs, the N50 is defined as the sequence length of the shortest contig at 50 (https://en.wikipedia.org/wiki/N50,_L50,_and_related_statistics)
Usage
1 | ncalc(len.vector, n)
|
Arguments
len.vector |
is a vector of sequence lengths |
n |
is a numeric of the value to use |
Value
numeric of the corresponding N value
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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