lcalc: calculate Lstatistics (e.g. L50) for given sequence...
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
View source: R/SequenceCharacteristics.R
Description
Given a set of contigs, each with its own length, the L50 count is defined
as the smallest number of contigs whose length sum makes up half of genome
size (https://en.wikipedia.org/wiki/N50,_L50,_and_related_statistics)
Usage
1
lcalc(len.vector, n)
Arguments
len.vector
is a vector of sequence lengths
n
is a numeric of the value to use
Value
character representation of md5sum
Examples
1
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value Examples
View source: R/SequenceCharacteristics.R
Description
Given a set of contigs, each with its own length, the L50 count is defined as the smallest number of contigs whose length sum makes up half of genome size (https://en.wikipedia.org/wiki/N50,_L50,_and_related_statistics)
Usage
1 | lcalc(len.vector, n)
|
Arguments
len.vector |
is a vector of sequence lengths |
n |
is a numeric of the value to use |
Value
character representation of md5sum
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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