isEnrichmentAnalysisComplete: accessory method to test whether the cas9 data indexing has...
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
View source: R/EnrichmentPresentation.R
Description
The cas9 workflow involves a deep dive into the experimental data and
produces a couple of Rdata files that contain the experimental context and
information relating to on-target, off-target and other effects. This method
tests whether the pre-process analysis has been performed
Usage
1
isEnrichmentAnalysisComplete(resultsDir = NULL)
Arguments
resultsDir
the location of the folder where files should be pulled
from - this should be determined automatically from config.yaml
Value
TRUE or FALSE depending
Examples
1
2
3
4
5
yamlFile <- system.file("extdata", "cas9_demo.yaml", package = "nanopoRe")
importConfigYAML(yamlFile=yamlFile)
# some demo data is stored with the package - import the data by supply the
# non-standard path
isEnrichmentAnalysisComplete(system.file("extdata", package="nanopoRe"))
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value Examples
View source: R/EnrichmentPresentation.R
Description
The cas9 workflow involves a deep dive into the experimental data and produces a couple of Rdata files that contain the experimental context and information relating to on-target, off-target and other effects. This method tests whether the pre-process analysis has been performed
Usage
1 | isEnrichmentAnalysisComplete(resultsDir = NULL)
|
Arguments
resultsDir |
the location of the folder where files should be pulled from - this should be determined automatically from config.yaml |
Value
TRUE or FALSE depending
Examples
1 2 3 4 5 | yamlFile <- system.file("extdata", "cas9_demo.yaml", package = "nanopoRe")
importConfigYAML(yamlFile=yamlFile)
# some demo data is stored with the package - import the data by supply the
# non-standard path
isEnrichmentAnalysisComplete(system.file("extdata", package="nanopoRe"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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