dorothea_hs: Human DoRothEA
In saezlab/dorothea_R: Collection Of Human And Mouse TF Regulons
Description
A table reporting signed human TF-target interactions. This database covers
in total 1395 TFs targeting 20,244 genes with 486,676 unique interactions.
In addition, each TF is accompanied with an emperical confidence level that
was derived from the number of supporting evidences for this
TF/interaction. The range is from A (high quality) to E (low quality).
Format
A table of human TF-target interactions:
- tf
TF identifier as HGNC symbols
- confidence
Summary confidence score classifying regulons based on
their quality
- target
target identifier as HGNC symbols
- mor
mode of regulation indicating the effect of a TF on the
target
Source
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6673718/
saezlab/dorothea_R documentation built on April 3, 2020, 1 a.m.
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Description
A table reporting signed human TF-target interactions. This database covers in total 1395 TFs targeting 20,244 genes with 486,676 unique interactions. In addition, each TF is accompanied with an emperical confidence level that was derived from the number of supporting evidences for this TF/interaction. The range is from A (high quality) to E (low quality).
Format
A table of human TF-target interactions:
- tf
TF identifier as HGNC symbols
- confidence
Summary confidence score classifying regulons based on their quality
- target
target identifier as HGNC symbols
- mor
mode of regulation indicating the effect of a TF on the target
Source
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6673718/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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