sim.update.chrom.table: Update the chromomosome table

In rxmenezes/SIM: Integrated Analysis on two human genomic datasets

Description

A function to update the genomic positions of chromosome arms. Base locations of the start and end of chromosome arms should be used from the same organism and build of genome as the location provided as annotation with the datasets.

Usage

	sim.update.chrom.table(db = "homo_sapiens_core_40_36b")

Arguments

db	database name

Details

This functions requires library RMySQL. Currently SIM only supports integrated analysis on the human genome without mitochondrial DNA.

Value

Chromosome table chrom.table.

Author(s)

Marten Boetzer, Renee X. de Menezes [e-mail]

References

http://www.ensembl.org/info/data/mysql.html

See Also

SIM, chrom.table

Examples

#youn need internet connection for this!
#sim.update.chrom.table(db = "homo_sapiens_core_40_36b")

rxmenezes/SIM documentation built on March 31, 2020, 12:51 a.m.