recipeUpdate: recipeUpdate

In rworkflow/ReUseData: Reusable and reproducible Data Management

recipeUpdate

Description

Function to sync and get the most updated and newly added data recipes through the pubic "rworkflow/ReUseDataRecipe" GitHub repository or user-specified private GitHub repository.

Usage

recipeUpdate(
  cachePath = "ReUseDataRecipe",
  force = FALSE,
  remote = FALSE,
  repos = "rworkflow/ReUseDataRecipe"
)

Arguments

cachePath	A character string specifying the name for the BiocFileCache object to store the ReUseData recipes. Once specified here, must use the same for cachePath argument in recipeSearch, and recipeLoad. Default is "ReUseDataRecipe".
force	Whether to remove existing and regenerate recipes cache. Default is FALSE. Only use if any old recipes that have been previously cached locally are updated remotely (on GitHub repos).
remote	Whether to download the data recipes directly from a GitHub repository. Default is FALSE.
repos	The GitHub repository containing data recipes that are to be synced to local cache. Only works when remote=TRUE. Default is "rworkflow/ReUseDataRecipe" GitHub repository where public data recipes are saved, which might be more up-to-date than the recipes contained inReUseData package. It can also be a private GitHub repository where users save their own data recipes.

Value

a recipeHub object.

Examples

## recipeUpdate()
## recipeUpdate(force=TRUE)
## recipeUpdate(force = TRUE, remote = TRUE)

rworkflow/ReUseData documentation built on Dec. 7, 2023, 11 p.m.