scMsigdbScoring: scMsigdbScoring
In rstatistics/SCKIT: Yet Another Single-Cell Analysis Toolkit (Yeskit)
Description
Usage
Arguments
Value
Author(s)
View source: R/scMSigdbScoring.R
Description
MSigdb signature scoring for single-cell clusters
Usage
1
scMsigdbScoring(object = NULL, category = NULL, geneSets = NULL)
Arguments
object
Seurat object
category
String of specific MSigDB category to use,
default category='H' stands for 'hallmark gene sets'
geneSets
Vector of gene sets, default geneSets='NULL'
stands for all gene sets in category will be used
Value
Seurat object
Author(s)
Wei Zhang
rstatistics/SCKIT documentation built on Dec. 22, 2021, 7:18 p.m.
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Description Usage Arguments Value Author(s)
View source: R/scMSigdbScoring.R
Description
MSigdb signature scoring for single-cell clusters
Usage
1 | scMsigdbScoring(object = NULL, category = NULL, geneSets = NULL)
|
Arguments
object |
Seurat object |
category |
String of specific MSigDB category to use, default category='H' stands for 'hallmark gene sets' |
geneSets |
Vector of gene sets, default geneSets='NULL' stands for all gene sets in category will be used |
Value
Seurat object
Author(s)
Wei Zhang
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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