setParam: Set a parameter

In rikenbit/scTensor: Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition

Set a parameter

Description

Function for setting parameter values.

Usage

setParam(object, name) <- value
## S4 method for signature 'CCSParams'
setParam(object, name, value)

Arguments

object	object to set parameter in.
name	name of the parameter to set.
value	value to set the paramter to.

Value

Object with new parameter value.

Examples

params <- newCCSParams()

setParam(params, "nGene") <- 20000
setParam(params, "nCell") <- c(12, 43, 323)
setParam(params, "cciInfo") <- list(nPair=2000,
                                   CCI1=list(
                                       LPattern=c(1,0,0),
                                       RPattern=c(0,1,1),
                                       nGene=100,
                                       fc="E10"),
                                   CCI2=list(
                                       LPattern=c(0,0,1),
                                       RPattern=c(1,1,1),
                                       nGene=200,
                                       fc="E10"),
                                   CCI3=list(
                                       LPattern=c(1,1,1),
                                       RPattern=c(1,0,1),
                                       nGene=300,
                                       fc="E10")
                                   )
setParam(params, "lambda") <- 0.1
setParam(params, "seed") <- 111

rikenbit/scTensor documentation built on Jan. 28, 2023, noon