Marioni: Marioni's dataset

In rikenbit/FUCHIKOMA: Revealing differentially expressed genes using nonlinear dimensionality reduction for single cell RNA-Seq data

Description

This is a reduced version for the RNA-seq count data from Marioni et al. (2008) along with additional annotation such as gene biotype, gene length, GC content, chromosome, start position and end position for genes in chromosomes I to IV. The expression data consists of 10 samples from kidney and liver tissues. There are five technical replicates (lanes) per tissue.

Usage

data(Marioni)

References

Marioni, J.C. and Mason, C.E. and Mane, S.M. and Stephens, M. and Gilad, Y. (2008) RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Research, 18: 1509–1517.

rikenbit/FUCHIKOMA documentation built on May 27, 2019, 9:09 a.m.