README.md
In rformassspectrometry/MsExperiment: Infrastructure for Mass Spectrometry Experiments
Managing mass spectrometry experiments
The MsExperiment package provides the MsExperiment class that can
be used to store and manage all aspects related to a complete
proteomics or metabolomics mass spectrometry experiment. This includes
- experimental design
- data files
- raw data: spectra and chromatograms
- proteomics identification results and protein database
- quantitative features
The respective data handling functionality is handled by dedicated
packages such as Spectra for spectra data, QFeatures for
quantitative features, Biostrings for fasta files, ...
See the package homepage
for more information.
This package is part of the RforMassSpectrometry initiative:
https://www.rformassspectrometry.org/
Installation
The package can be installed with
install.packages("BiocManager")
BiocManager::install("MsExperiment")
Contributions
Contributions are highly welcome and should follow the contribution
guidelines.
Also, please check the coding style guidelines in the RforMassSpectrometry
vignette.
rformassspectrometry/MsExperiment documentation built on April 18, 2024, 11:43 a.m.
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Managing mass spectrometry experiments
The MsExperiment package provides the MsExperiment class that can
be used to store and manage all aspects related to a complete
proteomics or metabolomics mass spectrometry experiment. This includes
- experimental design
- data files
- raw data: spectra and chromatograms
- proteomics identification results and protein database
- quantitative features
The respective data handling functionality is handled by dedicated
packages such as Spectra for spectra data, QFeatures for
quantitative features, Biostrings for fasta files, ...
See the package homepage for more information.
This package is part of the RforMassSpectrometry initiative: https://www.rformassspectrometry.org/
Installation
The package can be installed with
install.packages("BiocManager")
BiocManager::install("MsExperiment")
Contributions
Contributions are highly welcome and should follow the contribution guidelines. Also, please check the coding style guidelines in the RforMassSpectrometry vignette.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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