graph_non_transitive_subset_topology: Default preparation of graph topology
In redsnic/CIMICE: CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution

graph_non_transitive_subset_topology

R Documentation

Default preparation of graph topology

Description

By default, CIMICE computes the relation between genotypes using the subset relation. For the following steps it is also important that the transitive edges are removed.

Usage

graph_non_transitive_subset_topology(samples, labels)

Arguments

`samples`	mutational matrix
`labels`	genotype labels

Value

a graph with the wanted topology

Examples

require(dplyr)
preproc <- example_dataset() %>% dataset_preprocessing
samples <- preproc[["samples"]]
freqs   <- preproc[["freqs"]]
labels  <- preproc[["labels"]]
genes   <- preproc[["genes"]]
graph_non_transitive_subset_topology(samples, labels)

redsnic/CIMICE documentation built on March 30, 2022, 2:46 a.m.