Man pages for prabhakarlab/Banksy
Spatial transcriptomic clustering
| Banksy-package | The Banksy package |
| clusterBanksy | Perform clustering in BANKSY's neighborhood-augmented feature... |
| clusterNames | Get names of clustering runs. |
| compareClusters | Compare cluster outputs based on various clustering... |
| computeBanksy | Compute the component neighborhood matrices for the BANKSY... |
| connectClusters | Relabel cluster labels across parameter runs to maximise... |
| getBanksyMatrix | Builds the BANKSY matrix from neighborhood matrices. |
| hippocampus | Mouse Hippocampus VeraFISH data |
| rings | An unrealistic simulation of spatially-resolved omics data. |
| runBanksyPCA | Run PCA on a BANKSY matrix. |
| runBanksyUMAP | Run UMAP on a BANKSY embedding. |
| simulateDataset | Simulate an unrealistic spatial omics dataset. |
| smoothLabels | k-Nearest neighbor cluster label smoothing. |
