API for prabhakarlab/Banksy
Spatial transcriptomic clustering
| Global functions | |
|---|---|
| .onAttach | Source code |
| Banksy | Man page |
| Banksy-package | Man page |
| checkBanksyPCA | Source code |
| checkBanksyUMAP | Source code |
| checkClusterArgs | Source code |
| checkComputeBanksy | Source code |
| checkDimred | Source code |
| checkPCA | Source code |
| clusterBanksy | Man page Source code |
| clusterNames | Man page Source code |
| compareClusters | Man page Source code |
| computeBanksy | Man page Source code |
| computeHarmonics | Source code |
| computeNeighbors | Source code |
| connectClusters | Man page Source code |
| error | Source code Source code Source code Source code Source code Source code |
| generateClusterNames | Source code |
| getBanksyMatrix | Man page Source code |
| getClusterMatrix | Source code |
| getGraph | Source code |
| getLambdas | Source code |
| getLocs | Source code |
| getM | Source code |
| hippocampus | Man page |
| mapToSeed | Source code |
| rings | Man page |
| runBanksyPCA | Man page Source code |
| runBanksyUMAP | Man page Source code |
| runGraphBased | Source code |
| runKmeans | Source code |
| runMclust | Source code |
| scaler | Source code |
| simulateDataset | Man page Source code |
| smoothLabels | Man page Source code |
| smoother | Source code |
| unlistNested | Source code |
| verbose.seed | Source code |
