clusterPlot: Plots clusters of pathways with associated directionality.

View source: R/clusterPlotter.R

clusterPlotR Documentation

Plots clusters of pathways with associated directionality.

Description

Plots clusters of pathways with associated directionality.

Usage

clusterPlot(
  subNet,
  subplot = FALSE,
  topClusters = 2,
  prefix = "",
  outDir = ".",
  plotSave = TRUE
)

Arguments

subNet

pathways network (edge list of pathways)

subplot

if TRUE, store individual clusters plots and connected plots in Figures directory of plots

topClusters

plot figures for top x clusters

prefix

add prefix to plots

outDir

output directory

plotSave

saves the plot if set true. Otherwise display

Value

a set of plots for DE-PCXN and subclusters

Examples

data(miniTestsPanomiR)
clusterPlot(miniTestsPanomiR$miniPathClusts$DE_PCXN, plotSave = FALSE)

pouryany/PanomiR documentation built on Aug. 20, 2022, 11:17 p.m.