View source: R/clusterPlotter.R
clusterPlot | R Documentation |
Plots clusters of pathways with associated directionality.
clusterPlot( subNet, subplot = FALSE, topClusters = 2, prefix = "", outDir = ".", plotSave = TRUE )
subNet |
pathways network (edge list of pathways) |
subplot |
if TRUE, store individual clusters plots and connected plots in Figures directory of plots |
topClusters |
plot figures for top x clusters |
prefix |
add prefix to plots |
outDir |
output directory |
plotSave |
saves the plot if set true. Otherwise display |
a set of plots for DE-PCXN and subclusters
data(miniTestsPanomiR) clusterPlot(miniTestsPanomiR$miniPathClusts$DE_PCXN, plotSave = FALSE)
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