get.weights: Get precalculated statistical test weights
In pmoulos/metaseqR: An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/metaseqr.util.R
Description
This function returns pre-calculated weights
for human, chimpanzee, mouse, fruitfly and
arabidopsis based on the performance of
simulated datasets estimated from real data
from the ReCount database
(http://bowtie-bio.sourceforge.net/recount/).
Currently pre-calculated weights are available only
when all six statistical tests are used and for
normalization with EDASeq. For other combinations,
use the estimate.aufc.weights function.
Usage
1
2
get.weights(org = c("human", "chimpanzee", "mouse",
"fruitfly", "arabidopsis"))
Arguments
org
"human", "chimpanzee",
"mouse", "fruitfly" or
"arabidopsis".
Value
A named vector of convex weights.
Author(s)
Panagiotis Moulos
Examples
1
wh <- get.weights("human")
pmoulos/metaseqR documentation built on Dec. 21, 2020, 6:19 a.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/metaseqr.util.R
Description
This function returns pre-calculated weights
for human, chimpanzee, mouse, fruitfly and
arabidopsis based on the performance of
simulated datasets estimated from real data
from the ReCount database
(http://bowtie-bio.sourceforge.net/recount/).
Currently pre-calculated weights are available only
when all six statistical tests are used and for
normalization with EDASeq. For other combinations,
use the estimate.aufc.weights function.
Usage
1 2 | get.weights(org = c("human", "chimpanzee", "mouse",
"fruitfly", "arabidopsis"))
|
Arguments
org |
|
Value
A named vector of convex weights.
Author(s)
Panagiotis Moulos
Examples
1 | wh <- get.weights("human")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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