HmdbMetabolitesEntry: HMDB Metabolites entry class.

In pkrog/biodbHmdb: biodbHmdb, a library for connecting to the HMDB Database

HMDB Metabolites entry class.

Description

HMDB Metabolites entry class.

HMDB Metabolites entry class.

Details

This is the entry class for the HMDB Metabolites database.

Super classes

biodb::BiodbEntry -> biodb::BiodbXmlEntry -> HmdbMetabolitesEntry

Methods

Public methods

• HmdbMetabolitesEntry$new()

• HmdbMetabolitesEntry$clone()

Inherited methods

• biodb::BiodbEntry$appendFieldValue()
• biodb::BiodbEntry$cloneInstance()
• biodb::BiodbEntry$computeFields()
• biodb::BiodbEntry$fieldHasBasicClass()
• biodb::BiodbEntry$getBiodb()
• biodb::BiodbEntry$getDbClass()
• biodb::BiodbEntry$getField()
• biodb::BiodbEntry$getFieldCardinality()
• biodb::BiodbEntry$getFieldClass()
• biodb::BiodbEntry$getFieldDef()
• biodb::BiodbEntry$getFieldNames()
• biodb::BiodbEntry$getFieldValue()
• biodb::BiodbEntry$getFieldsAsDataframe()
• biodb::BiodbEntry$getFieldsAsJson()
• biodb::BiodbEntry$getFieldsByType()
• biodb::BiodbEntry$getId()
• biodb::BiodbEntry$getName()
• biodb::BiodbEntry$getParent()
• biodb::BiodbEntry$hasField()
• biodb::BiodbEntry$isNew()
• biodb::BiodbEntry$makesRefToEntry()
• biodb::BiodbEntry$parentIsAConnector()
• biodb::BiodbEntry$parseContent()
• biodb::BiodbEntry$print()
• biodb::BiodbEntry$removeField()
• biodb::BiodbEntry$setField()
• biodb::BiodbEntry$setFieldValue()

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Method new()

New instance initializer. Connector classes must not be instantiated directly. Instead, you must use the createConn() method of the factory class.

Usage

HmdbMetabolitesEntry$new(...)

Arguments

...

All parameters are passed to the super class initializer.

Returns

Nothing.

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Method clone()

The objects of this class are cloneable with this method.

Usage

HmdbMetabolitesEntry$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Examples

# Create an instance with default settings:
mybiodb <- biodb::newInst()

# Create a connector
conn <- mybiodb$getFactory()$createConn('hmdb.metabolites')

# Get an entry
 # Getting one entry requires the download of the whole database.
e <- conn$getEntry('HMDB0000001')


# Terminate instance.
mybiodb$terminate()

pkrog/biodbHmdb documentation built on Jan. 11, 2023, 4:09 a.m.