setGenome: Specify the reference genome, currently limited to hg38,...

setGenome,igvR-methodR Documentation

Specify the reference genome, currently limited to hg38, hg19, mm10, tair10.

Description

Specify the reference genome, currently limited to hg38, hg19, mm10, tair10.

Usage

## S4 method for signature 'igvR'
setGenome(obj, genomeName)

Arguments

obj

An object of class igvR

genomeName

A character string, one of "hg38", "hg19", "mm10", "tair10"

Value

An empty string, an error message if the requested genome is not yet supported

Examples

if(interactive()){
   igv <- igvR()
   setGenome(igv, "mm10")
   }


paul-shannon/igvR documentation built on Nov. 11, 2023, 8:26 p.m.