GEM_GUI: Graphical User Interface (GUI) for GEM
In panhongNTU/GEM: GEM: fast association study for the interplay of Gene, Environment and Methylation
Description
Usage
Details
Value
See Also
Examples
Description
The user friendly GUI for runing GEM package easily and quickly
Usage
1
GEM_GUI()
Details
The GEM package provides a highly efficient R tool suite for performing epigenome wide association
studies (EWAS). GEM provides three major functions named GEM_Emodel,
GEM_Gmodel and GEM_GxEmodel to study the interplay of Gene,
Environment and Methylation (GEM). Within GEM, the pre-existing "Matrix eQTL" package is
utilized and extended to study methylation quantitative trait loci (methQTL) and the
interaction of genotype and environment (GxE) to determine DNA methylation variation,
using matrix based iterative correlation and memory-efficient data analysis.
GEM can facilitate reliable genome-wide methQTL and GxE analysis on a standard laptop
computer within minutes.
Value
GEM model analysis results
See Also
Examples
1
#GEM_GUI()
panhongNTU/GEM documentation built on May 24, 2019, 6:14 p.m.
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Description Usage Details Value See Also Examples
Description
The user friendly GUI for runing GEM package easily and quickly
Usage
1 | GEM_GUI()
|
Details
The GEM package provides a highly efficient R tool suite for performing epigenome wide association
studies (EWAS). GEM provides three major functions named GEM_Emodel,
GEM_Gmodel and GEM_GxEmodel to study the interplay of Gene,
Environment and Methylation (GEM). Within GEM, the pre-existing "Matrix eQTL" package is
utilized and extended to study methylation quantitative trait loci (methQTL) and the
interaction of genotype and environment (GxE) to determine DNA methylation variation,
using matrix based iterative correlation and memory-efficient data analysis.
GEM can facilitate reliable genome-wide methQTL and GxE analysis on a standard laptop
computer within minutes.
Value
GEM model analysis results
See Also
Examples
1 | #GEM_GUI()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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