RankedGeneList-accessors: Accessor methods for class 'RankedGeneList'

In palenic/genePrioritization: Find Potential Disease-Related Genes

Description

Accessor methods for class RankedGeneList

Usage

getCandidates(object)

getSeed(object)

getResults(object)

getCoexpression(object)

getRanks(object)

Arguments

object

A RankedGeneList object

Value

A specific slot of the object

See Also

RankedGeneList, prioritizeCandidates

Examples

a <- matrix(c(1,2,3,2,4,6,8,6,4,5,2,8,7,1,5),
nrow=5, ncol=3,byrow=TRUE)
colnames(a) <- c('sample1','sample2','sample3')
rownames(a) <- c('gene1','gene2','gene3','gene4','gene5')
seed <- c('gene1')
candidates <- c('gene2','gene4')
z <- prioritizeCandidates(counts=a, seedGenes=seed,
candidateGenes=candidates, antiCorrelation=FALSE)
getSeed(z)

palenic/genePrioritization documentation built on Sept. 13, 2020, 12:16 a.m.