clust_groups: clust_groups
In oriolarques/GSEAmining: Make Biological Sense of Gene Set Enrichment Analysis Outputs
clust_groups R Documentation
clust_groups
Description
Takes the output of gm_clust, which is an hclust class object,
and returns a data frame that will be used in the rest of GSEAmining
functions gm_enrichreport, gm_enrichterms and gm_enrichcores.
Usage
clust_groups(df, hc)
Arguments
df
Data frame that contains at least three columns: an ID column for
the gene set names, a NES column with the normalized enrichment score and a
core_enrichment column containing the genes in the leading edge of each
gene set separated by '/'.
hc
The output of gm_clust, which is an hclust class object.
Value
A data.frame containing the cluster each gene set belongs to.
Examples
data(genesets_sel)
gs.cl <- gm_clust(genesets_sel)
clust.groups <- clust_groups(genesets_sel, gs.cl)
oriolarques/GSEAmining documentation built on June 27, 2023, 11:31 p.m.
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| clust_groups | R Documentation |
clust_groups
Description
Takes the output of gm_clust, which is an hclust class object, and returns a data frame that will be used in the rest of GSEAmining functions gm_enrichreport, gm_enrichterms and gm_enrichcores.
Usage
clust_groups(df, hc)
Arguments
df |
Data frame that contains at least three columns: an ID column for the gene set names, a NES column with the normalized enrichment score and a core_enrichment column containing the genes in the leading edge of each gene set separated by '/'. |
hc |
The output of gm_clust, which is an hclust class object. |
Value
A data.frame containing the cluster each gene set belongs to.
Examples
data(genesets_sel)
gs.cl <- gm_clust(genesets_sel)
clust.groups <- clust_groups(genesets_sel, gs.cl)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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