plot_coverage_profile: Plot Qualimap coverage profiles

In openanalytics/ggqualimap: Plots of Statistics Collected by Qualimap from RNASeq Data

Description

This function plots the coverage profiles of samples. If info regarding the group each sample belongs to is also available, then the generated plot will take that into account to colour / facet accordingly.

Usage

plot_coverage_profile(..., interactive = TRUE, geom = "line")

Arguments

interactive	logical, default is TRUE, which returns an interactive plotly plot. If FALSE, it returns a static ggplot2 plot.
geom	Only possible value is "line".
...	The set of qualimap objects to plot, usually of the form sample_name_1 = obj1, sample_name_2 = obj2, etc. See examples. The names will be used as title for facets.

Value

The plot object

See Also

qualimap plot_read_alignment plot_bias_profile plot_junction_analysis plot_genomic_origin

Examples

path = system.file("tests/qualimap-sample", package="ggqualimap")
obj = qualimap(sample_info = file.path(path, "annotation.txt"))

# interactive
plot_coverage_profile(sample = obj)

# non-interactive
plot_coverage_profile(sample = obj, interactive=FALSE)

openanalytics/ggqualimap documentation built on May 24, 2019, 2:28 p.m.