expressedGenes: Function identifies expressed features using the methods...
In omsai/groHMM: GRO-seq Analysis Pipeline
Description
Usage
Arguments
Value
Author(s)
Description
Function identifies expressed features using the methods introduced in
Core, Waterfall, Lis; Science, Dec. 2008.
Usage
1
expressedGenes(features, reads, Lambda = NULL, BPPARAM = bpparam())
Arguments
features
A GRanges object representing a set of genomic coordinates.
The meta-plot will be centered on the start position.
reads
A GRanges object representing a set of mapped reads.
Lambda
Measurement of assay noise. Default: 0.04 reads/ kb in a
library of 10,751,533 mapped reads. (background computed in Core,
Waterfall, Lis. (2008) Science.).
BPPARAM
Registered backend for BiocParallel.
Default: BiocParallel::bpparam()
Value
Returns a data.frame representing the expression p.values for
features of interest.
Author(s)
Charles G. Danko
omsai/groHMM documentation built on May 24, 2019, 2:18 p.m.
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Description Usage Arguments Value Author(s)
Description
Function identifies expressed features using the methods introduced in Core, Waterfall, Lis; Science, Dec. 2008.
Usage
1 | expressedGenes(features, reads, Lambda = NULL, BPPARAM = bpparam())
|
Arguments
features |
A GRanges object representing a set of genomic coordinates. The meta-plot will be centered on the start position. |
reads |
A GRanges object representing a set of mapped reads. |
Lambda |
Measurement of assay noise. Default: 0.04 reads/ kb in a library of 10,751,533 mapped reads. (background computed in Core, Waterfall, Lis. (2008) Science.). |
BPPARAM |
Registered backend for BiocParallel. Default: BiocParallel::bpparam() |
Value
Returns a data.frame representing the expression p.values for features of interest.
Author(s)
Charles G. Danko
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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