gtf2gr: gtf2gr
In omicsCore/SEQprocess: SEQprocess : a modularized and customizable pipeline framework for NGS processing in R package.
Description
Usage
Arguments
Details
View source: R/13_RNA.quantification.R
Description
Converts reference gtf file to GRanges form to execute FPKM estimation
Usage
1
gtf2gr(ref.gtf, output.dir)
Arguments
ref.gtf
Directoy stored at reference gtf file (e.g. gencode.v22.gtf)
output.dir
Output directory
Details
To normalize the number of reads of each feature calculated in the previous step to the value of FPKM, convert the reference
gtf file to GRanges format.
omicsCore/SEQprocess documentation built on May 7, 2020, 4:18 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details
View source: R/13_RNA.quantification.R
Description
Converts reference gtf file to GRanges form to execute FPKM estimation
Usage
1 | gtf2gr(ref.gtf, output.dir)
|
Arguments
ref.gtf |
Directoy stored at reference gtf file (e.g. gencode.v22.gtf) |
output.dir |
Output directory |
Details
To normalize the number of reads of each feature calculated in the previous step to the value of FPKM, convert the reference gtf file to GRanges format.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.