CBNplot-package: CBNplot: plot bayesian network inferred from gene expression...

In noriakis/CBNplot: plot bayesian network inferred from gene expression data based on enrichment analysis results

CBNplot: plot bayesian network inferred from gene expression data based on enrichment analysis results

Description

This package provides the visualization of bayesian network inferred from gene expression data. The networks are based on enrichment analysis results inferred from packages including clusterProfiler and ReactomePA. The networks between pathways and genes inside the pathways can be inferred and visualized.

Details

[CBNplot::bngeneplot()] - The main function using gene expression data within the pathway to infer Bayesian network. [CBNplot::bnpathplot()] - The main function using pathway expression data, which is defined by eigengene of the gene expression values to infer Bayesian network. [CBNplot::bngeneplotCustom()] - The function that provides custom visualization for the gene network. [CBNplot::bnpathplotCustom()] - The function that provides custom visualization for the pathway network.

Author(s)

Maintainer: Noriaki Sato [e-mail]

See Also

Useful links:

• https://github.com/noriakis/CBNplot

• Report bugs at https://github.com/noriakis/CBNplot/issues

noriakis/CBNplot documentation built on Oct. 10, 2024, 12:21 p.m.