differentialExpression: Differential Expression for 'TimeSeriesExperiment'

In nlhuong/vistimeseq: Analysis for short time-series data

Description

Getter method for differentialExpression slot of a TimeSeriesExperiment. The slot is a list with differential expression results possibly containing elements named 'timepoint_de', and 'trajectory_de' computed with timepointDE and trajectoryDE functions.

Usage

differentialExpression(object, ...)

## S4 method for signature 'TimeSeriesExperiment'
differentialExpression(object, name = NULL)

Arguments

object	a TimeSeriesExperiment object.
...	argiments to other functions.
name	one of elements of 'differentialExpression' slot: 'timepoint_de', 'trajectory_de'. If NULL, all elements are returned.

Value

a data.frame or a list of data.frames

Examples

data("endoderm_small")
endoderm_small <- trajectoryDE(endoderm_small)
head(differentialExpression(endoderm_small, "trajectory_de"))

nlhuong/vistimeseq documentation built on Sept. 4, 2021, 2:41 a.m.