tests/testthat/test_vst.R
In nlhuong/ZeroInflatedDESeq2: Differential gene expression analysis based on the negative binomial distribution
dds <- makeExampleDESeqDataSet(n=100, m=4)
design(dds) <- ~ 1
dds <- estimateSizeFactors(dds)
dds <- estimateDispersionsGeneEst(dds)
dds <- estimateDispersionsFit(dds, fitType="parametric")
vsd <- varianceStabilizingTransformation(dds, blind=FALSE)
dds <- estimateDispersionsFit(dds, fitType="local")
vsd <- varianceStabilizingTransformation(dds, blind=FALSE)
dds <- estimateDispersionsFit(dds, fitType="mean")
vsd <- varianceStabilizingTransformation(dds, blind=FALSE)
nlhuong/ZeroInflatedDESeq2 documentation built on May 23, 2019, 9:06 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
dds <- makeExampleDESeqDataSet(n=100, m=4)
design(dds) <- ~ 1
dds <- estimateSizeFactors(dds)
dds <- estimateDispersionsGeneEst(dds)
dds <- estimateDispersionsFit(dds, fitType="parametric")
vsd <- varianceStabilizingTransformation(dds, blind=FALSE)
dds <- estimateDispersionsFit(dds, fitType="local")
vsd <- varianceStabilizingTransformation(dds, blind=FALSE)
dds <- estimateDispersionsFit(dds, fitType="mean")
vsd <- varianceStabilizingTransformation(dds, blind=FALSE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.