design: Accessors for the 'design' slot of a DESeqDataSet object.

In nlhuong/ZeroInflatedDESeq2: Differential gene expression analysis based on the negative binomial distribution

Description

The design holds the R formula which expresses how the counts depend on the variables in colData. See DESeqDataSet for details.

Usage

## S4 method for signature 'DESeqDataSet'
design(object)

## S4 replacement method for signature 'DESeqDataSet,formula'
design(object) <- value

Arguments

object	a DESeqDataSet object
value	a formula used for estimating dispersion and fitting Negative Binomial GLMs

Examples

dds <- makeExampleDESeqDataSet(m=4)
design(dds) <- formula(~ 1)

nlhuong/ZeroInflatedDESeq2 documentation built on May 23, 2019, 9:06 p.m.