tests/testthat/test_interactions.R
In nlhuong/ZeroInflatedDESeq2: Differential gene expression analysis based on the negative binomial distribution
dds <- makeExampleDESeqDataSet(n=100,m=8)
colData(dds)$group <- factor(rep(c("x","y"),times=ncol(dds)/2))
design(dds) <- ~ condition + condition:group
dds <- DESeq(dds)
design(dds) <- ~ condition + group + condition:group
dds <- DESeq(dds)
# second order interactions error
dds <- makeExampleDESeqDataSet(n=100,m=16)
dds$x <- factor(rep(1:2,each=8))
dds$y <- factor(rep(rep(1:2,2),each=4))
dds$z <- factor(rep(rep(1:2,4),each=2))
design(dds) <- ~ x*y*z
expect_error(DESeq(dds))
nlhuong/ZeroInflatedDESeq2 documentation built on May 23, 2019, 9:06 p.m.
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dds <- makeExampleDESeqDataSet(n=100,m=8)
colData(dds)$group <- factor(rep(c("x","y"),times=ncol(dds)/2))
design(dds) <- ~ condition + condition:group
dds <- DESeq(dds)
design(dds) <- ~ condition + group + condition:group
dds <- DESeq(dds)
# second order interactions error
dds <- makeExampleDESeqDataSet(n=100,m=16)
dds$x <- factor(rep(1:2,each=8))
dds$y <- factor(rep(rep(1:2,2),each=4))
dds$z <- factor(rep(rep(1:2,4),each=2))
design(dds) <- ~ x*y*z
expect_error(DESeq(dds))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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