renameColumns: Rename columns of imported data frame

In nkurzaw/TPP2D: Detection of ligand-protein interactions from 2D thermal profiles (DLPTP)

Rename columns of imported data frame

Description

Rename columns of imported data frame

Usage

renameColumns(dataLong, idVar, geneNameVar)

Arguments

dataLong	long format data frame of imported dataset
idVar	character string indicating which data column provides the unique identifiers for each protein.
geneNameVar	character string of the column name that describes the gene name of a given protein in the raw data files

Value

data frame containing imported data with renamed columns

Examples

data("config_tab")
data("raw_dat_list")

dataList <- import2dMain(configTable = config_tab,
                         data = raw_dat_list,
                         idVar = "protein_id",
                         fcStr = "rel_fc_",
                         addCol = "gene_name",
                         naStrs = NA,
                         intensityStr = "signal_sum_",
                         nonZeroCols = "qusm",
                         qualColName = "qupm")
configLong <- configWide2Long(configWide = config_tab)
annoDat <- annotateDataList(dataList = dataList,
                            geneNameVar = "gene_name",
                            configLong = configLong,
                            intensityStr = "signal_sum_",
                            fcStr = "rel_fc_")
renameColumns(annoDat, 
              idVar = "protein_id", 
              geneNameVar = "gene_name")

nkurzaw/TPP2D documentation built on May 9, 2023, 10:04 a.m.