genautocorr: genautocorr setup
In nickbrazeau/NFBtools: Miscellaneous tools for the IDEEL group
Description
Usage
Arguments
Details
Author(s)
Description
Calculates genetic autocorrelation for later linkage disequilibrium filtering.
Usage
1
genautocorr(vcffile = NULL, vcfR = NULL, biallelicsnps = TRUE)
Arguments
vcffile
A variant call file (vcf) path. This VCF will be converted to an object of class vcfR.
Details
From an object of class vcfR, calculate the genetic autocorrelation as the estimate of linkage disequilibrium by genetic distance.
Author(s)
Bob Verity & Nick Brazeau
nickbrazeau/NFBtools documentation built on May 17, 2019, 6:37 a.m.
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Description Usage Arguments Details Author(s)
Description
Calculates genetic autocorrelation for later linkage disequilibrium filtering.
Usage
1 | genautocorr(vcffile = NULL, vcfR = NULL, biallelicsnps = TRUE)
|
Arguments
vcffile |
A variant call file (vcf) path. This VCF will be converted to an object of class |
Details
From an object of class vcfR, calculate the genetic autocorrelation as the estimate of linkage disequilibrium by genetic distance.
Author(s)
Bob Verity & Nick Brazeau
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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