plot_marker_ranking_heatmap: Marker ranking heatmap

In niaid/HDStIM: High Dimensional Stimulation Immune Mapping ('HDStIM')

Marker ranking heatmap

Description

A consolidated heatmap showing the importance scores of all the state markers (X-axis) from all the stimulation-cell population combinations that passed the Fisher's exact test (Y-axis).

Usage

plot_marker_ranking_heatmap(marker_ranking)

Arguments

marker_ranking

Returned list from the marker_ranking_boruta function.

Value

A ComplexHeatmap object

Examples

mapped_data <- HDStIM(chi11$expr_data, chi11$state_markers,
                      chi11$cluster_col, chi11$stim_label,
                      chi11$unstim_label, seed_val = 123, umap = TRUE,
                      umap_cells = 50, verbose = FALSE)

marker_ranking <- marker_ranking_boruta(mapped_data, path = NULL, n_cells = NULL,
                                        max_runs = 1000, seed_val = 123,
                                        verbose = 0)

pht <- plot_marker_ranking_heatmap(marker_ranking)

niaid/HDStIM documentation built on Oct. 15, 2023, 4:43 p.m.