scGOBarPlot: scGOBarPlot visualization
In ncrna/Yeskit.old: Yet Another Single-Cell Analysis Toolkit (Yeskit)
Description
Usage
Arguments
Author(s)
Description
GO BarPlot visualization for each cluster
Usage
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scGOBarPlot(
object = NULL,
key = NULL,
cluster = NULL,
direction = "up",
ont = "BP",
top_n = 20,
extra = NULL
)
Arguments
object
Seurat object
key
The 'scGO' results that stored in object@misc$key
cluster
Cluster to presentation
direction
Regulation direction to use, only 'up' or 'down'
ont
Ontology to use, only 'BP', 'CC', or 'MF'
top_n
Only top_n entries to plot
extra
Extra slot used to fetch GOs
Author(s)
rstatistics
ncrna/Yeskit.old documentation built on Dec. 22, 2021, 12:06 a.m.
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Description Usage Arguments Author(s)
Description
GO BarPlot visualization for each cluster
Usage
1 2 3 4 5 6 7 8 9 | scGOBarPlot(
object = NULL,
key = NULL,
cluster = NULL,
direction = "up",
ont = "BP",
top_n = 20,
extra = NULL
)
|
Arguments
object |
Seurat object |
key |
The 'scGO' results that stored in object@misc$key |
cluster |
Cluster to presentation |
direction |
Regulation direction to use, only 'up' or 'down' |
ont |
Ontology to use, only 'BP', 'CC', or 'MF' |
top_n |
Only top_n entries to plot |
extra |
Extra slot used to fetch GOs |
Author(s)
rstatistics
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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