subsetClones: Subset the product of combineTCR() or combineBCR()
In ncborcherding/scRepertoire: A toolkit for single-cell immune receptor profiling

subsetClones

R Documentation

Subset the product of combineTCR() or combineBCR()

Description

This function allows for the subsetting of the product of combineTCR() or combineBCR() by the name of the individual list element.

Usage

subsetClones(input.data, name, variables = NULL)

Arguments

`input.data`	The product of `combineTCR()` or `combineBCR()`.
`name`	The column header/name to use for subsetting.
`variables`	The values to subset by, must be in the names(input.data).

Value

list of contigs that have been filtered for the name parameter

Examples

combined <- combineTCR(contig_list, 
                        samples = c("P17B", "P17L", "P18B", "P18L", 
                                    "P19B","P19L", "P20B", "P20L"))
subset <- subsetClones(combined, name = "sample", variables = c("P17B"))

ncborcherding/scRepertoire documentation built on Nov. 5, 2024, 2:05 p.m.