In ncborcherding/scRepertoire: A toolkit for single-cell immune receptor profiling

all_times <- list()  # store the time for each chunk
knitr::knit_hooks$set(time_it = local({
  now <- NULL
  function(before, options) {
    if (before) {
      now <<- Sys.time()
    } else {
      res <- difftime(Sys.time(), now, units = "secs")
      all_times[[options$label]] <<- res
    }
  }
}))
knitr::opts_chunk$set(
  tidy = TRUE,
  tidy.opts = list(width.cutoff = 95),
  message = FALSE,
  warning = FALSE,
  time_it = TRUE
)

scRepertoire requires R version 4.1 or greater and highly recommend installing R Studio.

Release Notes

A full copy of the changes in each version can be found in the NEWS/ChangeLog.

GitHub Branches

scRepertoire is an active project, that receives a number of changes based on user feedback, the most up-to-date versions are available via the GitHub repositories. These versions can be installed using devtools::install_github() or remotes::install_github(). The dev version is the active development branch and might be less stable than the main branch or bioconductor versions.

devtools::install_github(repo = "ncborcherding/scRepertoire")

remotes::install_github(repo = "ncborcherding/scRepertoire", ref = "dev")

Bioconductor

The current version of scRepertoire is also available in the development version of Bioconductor.

BiocManager::install("scRepertoire")

ncborcherding/scRepertoire documentation built on Jan. 4, 2025, 3:23 a.m.