ncborcherding/scRepertoire: A toolkit for single-cell immune receptor profiling

scRepertoire is a toolkit for processing and analyzing single-cell T-cell receptor (TCR) and immunoglobulin (Ig). The scRepertoire framework supports use of 10x, AIRR, BD, MiXCR, Omniscope, TRUST4, and WAT3R single-cell formats. The functionality includes basic clonal analyses, repertoire summaries, distance-based clustering and interaction with the popular Seurat and SingleCellExperiment/Bioconductor R workflows.

README.md

Vignettes Man pages API and functions Files

Package details
Bioconductor views	Annotation Classification ImmunoOncology Sequencing SingleCell Software
Maintainer
License	MIT + file LICENSE
Version	2.2.1
URL	https://www.borch.dev/uploads/scRepertoire/
Package repository	View on GitHub
Installation	Install the latest version of this package by entering the following in R: `install.packages("remotes") remotes::install_github("ncborcherding/scRepertoire")`