iEDGE_DE: iEDGE_DE performs differential expression analysis and...

In montilab/iEDGE: integrative analysis of (epi-)DNA and gene expression data

Description

iEDGE_DE performs differential expression analysis and pathway enrichment and saves to text tables

Usage

iEDGE_DE(cn, gep, cisgenes, transgenes, header, gepid, cnid, f.dir.out,
  fdr.cis.cutoff = 0.25, fdr.trans.cutoff = 0.05, min.group = 3,
  min.drawsize = 3, cndir = "alteration_direction",
  cis.onesided = TRUE, trans.onesided = FALSE, fc.cis = NA,
  fc.trans = NA, ...)

montilab/iEDGE documentation built on Sept. 7, 2019, 4:18 a.m.