dot-dots_plot: Plot top enriched genesets

In montilab/hypeR: An R Package For Geneset Enrichment Workflows

Plot top enriched genesets

Description

Plot top enriched genesets

Usage

.dots_plot(
  hyp_df,
  top = 20,
  abrv = 50,
  size_by = c("genesets", "significance", "none"),
  pval_cutoff = 1,
  fdr_cutoff = 1,
  val = c("fdr", "pval"),
  title = ""
)

Arguments

hyp_df	A dataframe from a hyp object
top	Limit number of genesets shown
abrv	Abbreviation length of genesetlabels
size_by	Size dots by e.g. c("genesets", "significance", "none")
pval_cutoff	Filter results to be less than pval cutoff
fdr_cutoff	Filter results to be less than fdr cutoff
val	Choose significance value e.g. c("fdr", "pval")
title	Plot title

Value

A ggplot object

montilab/hypeR documentation built on Oct. 29, 2023, 12:01 p.m.