README.md

In molepi/omicsPrint: Cross omic genetic fingerprinting

Cross omic genetic fingerprinting

This R package provides functionality to perform sample relationship verification using different omic data types. Such as, 450k DNA methylation data, RNA-sequencing or DNA based genotypes sequencing or array based imputed.

Checkout the vignettes directory for a few examples.

Installation

Install using the devtools-package

First install devtools. Next use:

```{r devtools, eval=FALSE} library(devtools) install_github("molepi/omicsPrint")

Sometimes `install_github` fails with CA cert error. Try running
`httr::set_config(httr::config( ssl_verifypeer = 0L))` before running
`install_github`!

## Install from source using `git/R` ##

Using [git](https://git-scm.com/), e.g, use `git clone` and then build
and install the package from source:

```{r git, engine='bash', eval=FALSE}
git clone [e-mail]:molepi/omicsPrint.git
R CMD build omicsPrint
R CMD INSTALL omicsPrint_x.y.z.tar.gz

Change _x.y.z. to the proper version you downloaded!

Vignettes

A few vignettes are provides showing applications of using omicsPrint to simulated and publicly available data:

• omicsPrint

• GSE39672

• GSE52980

molepi/omicsPrint documentation built on May 23, 2019, 6:02 a.m.