metabdata: A sample data set of truncated metabolomics data

In mnodzenski/metabomxtr: A package to run mixture models for truncated metabolomics data with normal or lognormal distributions

A sample data set of truncated metabolomics data

Description

This data set contains log transformed metabolite levels and phenotype data of sample 115 of pregnant women. Metabolite levels are contained in columns 11-59, and missing values are indicated by NA. All metabolites included contain at least 5 missing values. Columns 1:10 represent phenotypic data.

Usage

data(metabdata)

Format

A data frame with 115 observations on the following 59 variables.

sample

a numeric vector representing sample number.

PHENO

a factor representing high and low fasting blood glucose, with levels MomHighFPG MomLowFPG.

age_ogtt

a numeric vector representing the woman's age in years when the oral glucose tolerance test was performed.

age_ogtt_mc

a numeric vector representing mean centered age_ogtt.

ga_ogtt_wks

a numeric vector representing gestational age in weeks when the oral glucose tolerance test was performed.

ga_ogtt_wks_mc

a numeric vector representing mean centered ga_ogtt_wks.

FCg

a factor representing field center where the data were collected with levels BCD E F P.

parity12

a numeric vector with 1 indicative of previous pregnancy and 0 otherwise.

storageTimesYears

a numeric vector representing the number of years the metabolite sample had been stored prior to assay.

storageTimesYears_mc

a numeric vector representing mean centered storageTimesYears.

ketovaline

a numeric vector representing log2 transformed metabolite abundance.

alpha.ketoglutaric.acid

a numeric vector representing log2 transformed metabolite abundance.

ketoleucine

a numeric vector representing log2 transformed metabolite abundance.

acetoacetate

a numeric vector representing log2 transformed metabolite abundance.

aldohexose

a numeric vector representing log2 transformed metabolite abundance.

beta.alanine

a numeric vector representing log2 transformed metabolite abundance.

methylmalonic.acid

a numeric vector representing log2 transformed metabolite abundance.

creatinine

a numeric vector representing log2 transformed metabolite abundance.

hexuronic.acid

a numeric vector representing log2 transformed metabolite abundance.

ethanolamine

a numeric vector representing log2 transformed metabolite abundance.

glutamine

a numeric vector representing log2 transformed metabolite abundance.

glycolic.acid

a numeric vector representing log2 transformed metabolite abundance.

isoleucine

a numeric vector representing log2 transformed metabolite abundance.

malonic.acid

a numeric vector representing log2 transformed metabolite abundance.

ribose

a numeric vector representing log2 transformed metabolite abundance.

phenylalanine

a numeric vector representing log2 transformed metabolite abundance.

pyruvic.acid

a numeric vector representing log2 transformed metabolite abundance.

hexitol.1

a numeric vector representing log2 transformed metabolite abundance.

lysine

a numeric vector representing log2 transformed metabolite abundance.

disaccharide.1

a numeric vector representing log2 transformed metabolite abundance.

tyrosine

a numeric vector representing log2 transformed metabolite abundance.

leucine

a numeric vector representing log2 transformed metabolite abundance.

hexitol.2

a numeric vector representing log2 transformed metabolite abundance.

disaccharide.2

a numeric vector representing log2 transformed metabolite abundance.

ornithine

a numeric vector representing log2 transformed metabolite abundance.

disaccharide.3

a numeric vector representing log2 transformed metabolite abundance.

beta.tocopherol

a numeric vector representing log2 transformed metabolite abundance.

hexitol.3

a numeric vector representing log2 transformed metabolite abundance.

benzene.1.2.4.triol

a numeric vector representing log2 transformed metabolite abundance.

heptadecane

a numeric vector representing log2 transformed metabolite abundance.

nonadecane

a numeric vector representing log2 transformed metabolite abundance.

tetradecanedioic.acid

a numeric vector representing log2 transformed metabolite abundance.

pentadecanoic.acid

a numeric vector representing log2 transformed metabolite abundance.

undecane

a numeric vector representing log2 transformed metabolite abundance.

methyl.heptadecanoate

a numeric vector representing log2 transformed metabolite abundance.

hydrocarbon

a numeric vector representing log2 transformed metabolite abundance.

deoxyhexose

a numeric vector representing log2 transformed metabolite abundance.

glucose

a numeric vector representing log2 transformed metabolite abundance.

pentose.sugar

a numeric vector representing log2 transformed metabolite abundance.

hexitol.4

a numeric vector representing log2 transformed metabolite abundance.

beta.sitosterol

a numeric vector representing log2 transformed metabolite abundance.

X1.5.anhydroglucitol

a numeric vector representing log2 transformed metabolite abundance.

threonine

a numeric vector representing log2 transformed metabolite abundance.

proline

a numeric vector representing log2 transformed metabolite abundance.

campesterol

a numeric vector representing log2 transformed metabolite abundance.

X6.deoxy.glucose

a numeric vector representing log2 transformed metabolite abundance.

erythronic.acid

a numeric vector representing log2 transformed metabolite abundance.

methyl.myristate

a numeric vector representing log2 transformed metabolite abundance.

methyl.eicosanoate

a numeric vector representing log2 transformed metabolite abundance.

Source

Scholtens DM, Muehlbauer MJ, Daya NR, Stevens RD, Dyer AR, Lowe LP, Metzger BE, Newgard CB, Bain JR, Lowe WL Jr; HAPO Study Cooperative Research Group. Metabolomics reveals broad-scale metabolic perturbations in hyperglycemic mothers during pregnancy. Diabetes Care. 2014 Jan; 37(1):158-66.

mnodzenski/metabomxtr documentation built on Aug. 24, 2022, 1:40 p.m.