write_metabolism: Metabolism table

In mirnavazquez/RbiMs: R Tools for Reconstruncting Bin Metabolisms

Metabolism table

Description

Creates a metabolism table that includes the information from KEGG and Interpro annotation.

Usage

write_metabolism(data_interpro=NULL, data_ko=NULL)

Arguments

data_interpro	a table, output of InterProScan on tsv format. InterProScan should have been run with -pa option to be able to use the KEGG option, in the database argument.
data_ko	path to the directory where the KEGG output files are.

Details

This function is part of a package used for the analysis of bins metabolism.

Examples

## Not run: 
write_metabolism("inst/extdata/Interpro_test.tsv", 
"inst/extdata/")

## End(Not run)

mirnavazquez/RbiMs documentation built on Sept. 6, 2024, 1:05 p.m.