addTriNucleotideDistribution: Add trinucleotide distribution annotations
In mil2041/CNCDriver: CNCDriver
Description
Usage
Arguments
Value
Examples
View source: R/somaticSignature-addTriNucleotideDistribution.R
Description
Add trinucleotide distribution annotations
Usage
1
Arguments
dat
reducedFunseqOutput data frame
Value
triNucleotideDat data frame
Examples
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#date<-getRunDates(latest=TRUE)
cancerType<-"KIRC"
selectedSampleId<-NA
#worDir<-getwd()
mutSig2CVthreshold<-0.1
rareMutationUpperLimit<-0.3
rareMutationLowerLimit<-0.1
rareMutationFreq<-0.02
#runNetBox2(dataDir,cancerType,
# mutationList,ampGeneList,delGeneList,epiSilencedList,
# mutationFreq,ampGeneFreq,delGeneFreq,epiSilencedFreq,
# pathwayCommonsDb,directed,
# linkerPValThreshold,communityDetectionMethod,
# keepIsolatedNodes,verbose=TRUE)
mil2041/CNCDriver documentation built on Dec. 13, 2020, 3:41 a.m.
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Description Usage Arguments Value Examples
View source: R/somaticSignature-addTriNucleotideDistribution.R
Description
Add trinucleotide distribution annotations
Usage
1 |
Arguments
dat |
reducedFunseqOutput data frame |
Value
triNucleotideDat data frame
Examples
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | #date<-getRunDates(latest=TRUE)
cancerType<-"KIRC"
selectedSampleId<-NA
#worDir<-getwd()
mutSig2CVthreshold<-0.1
rareMutationUpperLimit<-0.3
rareMutationLowerLimit<-0.1
rareMutationFreq<-0.02
#runNetBox2(dataDir,cancerType,
# mutationList,ampGeneList,delGeneList,epiSilencedList,
# mutationFreq,ampGeneFreq,delGeneFreq,epiSilencedFreq,
# pathwayCommonsDb,directed,
# linkerPValThreshold,communityDetectionMethod,
# keepIsolatedNodes,verbose=TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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