check_wilcoxon: Calculate Wilcoxon test (unpaired; BH correction) for the...
In microbiome/microbiomeold: Tools for microbiome analysis
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
Calculate Wilcoxon test (unpaired; BH correction) for the
specified sample groups.
Usage
1
2
check_wilcoxon(dat, G1, G2, p.adjust.method = "BH", sort = FALSE,
paired = FALSE)
Arguments
dat
data matrix (features x samples)
G1
Sample group 1 (for comparison)
G2
Sample group 2 (for comparison)
p.adjust.method
p-value correction method for p.adjust function
(default 'BH'). If NULL, no correction will be performed.
sort
sort the results
paired
paired Wilcoxon test
Value
(Corrected) p-values for two-group comparison.
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
1
2
data(peerj32)
pval <- check_wilcoxon(t(peerj32$microbes), G1 = 1:22, G2 = 23:44)
microbiome/microbiomeold documentation built on May 22, 2019, 9:57 p.m.
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Description Usage Arguments Value Author(s) References Examples
Description
Calculate Wilcoxon test (unpaired; BH correction) for the specified sample groups.
Usage
1 2 | check_wilcoxon(dat, G1, G2, p.adjust.method = "BH", sort = FALSE,
paired = FALSE)
|
Arguments
dat |
data matrix (features x samples) |
G1 |
Sample group 1 (for comparison) |
G2 |
Sample group 2 (for comparison) |
p.adjust.method |
p-value correction method for p.adjust function (default 'BH'). If NULL, no correction will be performed. |
sort |
sort the results |
paired |
paired Wilcoxon test |
Value
(Corrected) p-values for two-group comparison.
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
1 2 | data(peerj32)
pval <- check_wilcoxon(t(peerj32$microbes), G1 = 1:22, G2 = 23:44)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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