getCellBase-CellBaseR-method: getCellBase

In melsiddieg/cellbaseR: Querying annotation data from the high performance Cellbase web

getCellBase

Description

The generic method for querying CellBase web services.

Usage

## S4 method for signature 'CellBaseR'
getCellBase(object, category, subcategory, ids, resource, param = NULL)

Arguments

object	an object of class CellBaseR
category	character to specify the category to be queried.
subcategory	character to specify the subcategory to be queried
ids	a character vector of the ids to be queried
resource	a character to specify the resource to be queried
param	an object of class CellBaseParam specifying additional param for the CellBaseR

Details

This method allows the user to query the cellbase web services without any predefined categories, subcategries, or resources.

Value

a dataframe holding the results of the query

See Also

https://github.com/opencb/cellbase/wiki and the RESTful API documentation http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/

Examples

   cb <- CellBaseR()
   res <- getCellBase(object=cb, category="feature", subcategory="gene", 
   ids="TET1", resource="info")

melsiddieg/cellbaseR documentation built on Jan. 16, 2024, 4:12 a.m.