run_excyte: Master function to run preprocessing,phenograph clustering...

In maxmeyl/excyte_1.0: Exhaustive eXploration of CYTometry data

Description

Master function to run preprocessing,phenograph clustering and umap computation

Usage

run_excyte(fcs_dir, downsampling = 3000, channels = "all", k = 30)

Arguments

fcs_dir	directory or vector containing fcs files to be used
downsampling	numeric indicating the number event to randomly select from each fcs, if the number of events request is bigger than the number of event in the fcs, all event are selected
channels	vector containing channels to select. Can be "all" to select all channels, "with_desc" to select channels with a marker description or a vector a channels.
k	numeric indicating the number of neighbor for phenograph and umap computation

maxmeyl/excyte_1.0 documentation built on March 7, 2020, 2:01 a.m.