Files in martaint/InterCellar
InterCellar: an R-Shiny app for interactive analysis and exploration of cell-cell communication in single-cell transcriptomics
.Rbuildignore
.dockerignore
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
Dockerfile
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/app_config.R
R/app_server.R
R/app_ui.R
R/data.R
R/fct_annotation.R
R/fct_cluster_verse.R
R/fct_function_verse.R
R/fct_gene_verse.R
R/fct_int_pair_modules.R
R/fct_multi_cond.R
R/fct_upload.R
R/fct_upload_custom.R
R/golem_utils_server.R
R/golem_utils_ui.R
R/mod_about.R
R/mod_cluster_verse.R
R/mod_function_verse.R
R/mod_gene_verse.R
R/mod_int_pair_modules.R
R/mod_multi_cond.R
R/mod_table_view.R
R/mod_upload.R
R/mod_upload_custom.R
R/run_app.R
R/sysdata.rda
R/utils_upload.R
README.Rmd
README.md
data-raw/input_data.R
data-raw/internal_data.R
data/input.data.rda
dev/01_start.R
dev/02_dev.R
dev/03_deploy.R
dev/run_dev.R
inst/app/extdata/cpdb_complex_input.csv
inst/app/extdata/cpdb_gene_input.csv
inst/app/extdata/custom_input.csv
inst/app/www/About_shiny_lowres.png
inst/app/www/logoShiny.png
inst/app/www/logo_lowres.png
inst/golem-config.yml
man/annotateGO.Rd
man/annotatePathways.Rd
man/buildPairsbyFunctionMatrix.Rd
man/checkLL_RR.Rd
man/circlePlot.Rd
man/combineAnnotations.Rd
man/createBarPlot1_ggplot.Rd
man/createBarPlot2_CV.Rd
man/createBarPlot2_ggplot.Rd
man/createBarPlot_CV.Rd
man/createNetwork.Rd
man/dendroIntPairModules.Rd
man/elbowPoint.Rd
man/ensemblLink.Rd
man/getBack2BackBarplot.Rd
man/getBarplotDF.Rd
man/getBarplotDF2.Rd
man/getClusterA_Names.Rd
man/getClusterColors.Rd
man/getClusterNames.Rd
man/getClusterNetwork.Rd
man/getClusterSize.Rd
man/getDistinctCouplets.Rd
man/getDotPlot_selInt.Rd
man/getGObiomaRt.Rd
man/getGeneTable.Rd
man/getHitsf.Rd
man/getIntFlow.Rd
man/getNtermsBYdb.Rd
man/getNumLR.Rd
man/getPieChart.Rd
man/getRadar_df.Rd
man/getRankedTerms.Rd
man/getSignif_table.Rd
man/getSignificantFunctions.Rd
man/getSignificantFunctions_multiCond.Rd
man/getSunburst.Rd
man/getUMAPipModules.Rd
man/getUniqueDotplot.Rd
man/getUniqueIntpairs_byCond.Rd
man/goLink.Rd
man/input.data.Rd
man/read.CPDBv2.Rd
man/read.SCsignalR.Rd
man/read.cellchat.Rd
man/read.customInput.Rd
man/read.icellnet.Rd
man/run_app.Rd
man/subsetAnnot_multiCond.Rd
man/subsetFuncMatBYFlow.Rd
man/swap.RLint.Rd
man/uniprotLink.Rd
man/updateInputLR.Rd
tests/testthat.R
tests/testthat/test-golem-recommended.R
vignettes/.gitignore
vignettes/InterCellar.bib
vignettes/screenshots/MC_clust_bar.png
vignettes/screenshots/MC_clust_radar.png
vignettes/screenshots/MC_func_sun.png
vignettes/screenshots/MC_gene_dot.png
vignettes/screenshots/cl_verse_bar.png
vignettes/screenshots/cl_verse_net.png
vignettes/screenshots/f_verse_sunburst.png
vignettes/screenshots/g_verse_dot.png
vignettes/screenshots/g_verse_table.png
vignettes/screenshots/ipM_analysis.png
vignettes/screenshots/ipM_circle.png
vignettes/screenshots/ipM_function.png
vignettes/screenshots/upload.png
vignettes/user_guide.Rmd
